About this project
- Karolina’s Thesis that will be
- IDM final Thesis
- Published paper co-authored with Elizabeth Henaff, PhD in BTD
Thesis link
Overall understanding of the Project also known as project website
Notes 02-24-25In file: PCRinSilico.py
Tweaks of pcr_in_silico
replace line number 205
existing:
# amp_df.to_csv(out_file + '.tsv', index=False, sep="\t")change to:
amp_df.to_csv(out_file + '.tsv', mode='a', index=False, sep="\t")comment out line 254:
existing:
with pd.ExcelWriter(out_file + '.xlsx', engine='xlsxwriter') as writer:
amp_df.to_excel(writer, sheet_name='amplicons', index=False)
dimers.to_excel(writer, sheet_name='dimers', index=False)
tm_df.to_excel(writer, sheet_name='interactions', index=False)change to:
#with pd.ExcelWriter(out_file + '.xlsx', engine='xlsxwriter') as writer:
# amp_df.to_excel(writer, sheet_name='amplicons', index=False)
# dimers.to_excel(writer, sheet_name='dimers', index=False)
# tm_df.to_excel(writer, sheet_name='interactions', index=False)Project tasks
Not started
LAMP 2
LAMP 2
April 13, 2025 → April 30, 2025
Biodesign Symposium Call for PapersBiodesign Symposium Call for Papers
May 8, 2025 → May 10, 2025
waiting
In progress
PCR test 2PCR test 2
March 1, 2025 → March 16, 2025
Object Design 2Object Design 2
April 1, 2025 → April 30, 2025
Boston - 2025 Bioremediation SymposiuBoston - 2025 Bioremediation Symposiu
June 23, 2025 → June 26, 2025
Done
Timeline planningTimeline planning
February 5, 2025 → February 6, 2025
PCR test 1PCR test 1
February 6, 2025 → February 28, 2025
Object Design 1Object Design 1
February 18, 2025 → March 31, 2025